Atlas Selection by Comparison in Template Space 1.2 alpha (Atlas_Selection_by_Comparison_in_Template_Space)

IACL.Registration.Volume

[edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmAtlasSelection]

Description

Selects N Atlases from potential atlases by comparing the subject in template space against all potential atlases also in template space.
Algorithm Version: 1.2
GUI Version: 1.2
NMI is used currently used as the comparison meteric.

Inputs

Name Default Type File Extension Description
Subject SubjectVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Subject
Template TemplateVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Template
Template Label Template LabelVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Template Label
Selection method NMI in Template SpaceOption
  1. NMI in Template Space
  2. NMI in Subject Space(Affined)
 - Selection method
Compare only within Label falseBoolean - Compare only within Label
Potential Atlases
    		FileCollection - Potential Atlases
    Potential Atlases Labels
      		FileCollection - Potential Atlases Labels
      Potential Atlases Pre-Registered to Template
        		FileCollection - Potential Atlases Pre-Registered to Template
        Number of Atlases to Select 0Integer - Number of Atlases to Select
        Configuration /home/VANDERBILT/landmaba/jist/build/jist-bin-modules/edu/jhu/ece/iacl/algorithms/vabra/config.xmlFile - Configuration
        Type for Channel 1 0:TriLinearOption
        1. 0:TriLinear
        2. 1:NNI
        		 - Type for Channel 1
        Type for Channel 2 0:TriLinearOption
        1. 0:TriLinear
        2. 1:NNI
        		 - Type for Channel 2
        Type for Channel 3 0:TriLinearOption
        1. 0:TriLinear
        2. 1:NNI
        		 - Type for Channel 3
        Type for Remaining Channels (Use Index from Options Above) (Optional) NumberCollection - Type for Remaining Channels (Use Index from Options Above)
        Percentile of Image Above Robust Maximum (0.0-1.0) 0Double - Percentile of Image Above Robust Maximum (0.0-1.0)
        Percentile of Image Below Robust Minimum (0.0-1.0) 0Double - Percentile of Image Below Robust Minimum (0.0-1.0)
        Number of Bins used in Histogram 64Integer - Number of Bins used in Histogram
        First Run 9-DOF Affine Registration (FLIRT) trueBoolean - First Run 9-DOF Affine Registration (FLIRT)

        Outputs

        Name Type File Extension Description
        Selected Atlases VolumeCollection - Selected Atlases
        Selected Atlases Labels VolumeCollection - Selected Atlases Labels
        Execution Time Performance - Execution Time

        Authors

        Last modified by VANDERBILT\landmaba on Thu, 21 Jan 2010 14:27:27 CST