Optimized_Automated_Registration 1.6 R (Optimized Automated Registration)

IACL.Registration.Volume

[edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRT]

Description

Global registration algorithm based on FLIRT.

Notes

Finds a linear transformation bringing the source volume into the space of the target volume. Degrees of freedom can be specified. This is a wrapper around MIPAV's implementation of FLIRT.

Inputs

Name Default Type File Extension Description
Source volume Source volumeVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Source volume
Target volume Target volumeVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Target volume
Reference Weighted volume (Optional) Reference Weighted volumeVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Reference Weighted volume
Input Weighted volume (Optional) Input Weighted volumeVolume
  • dim{X,Y,Z,1}
  • type{any}
Supported Formats Input Weighted volume
Degrees of freedom Affine - 12Option
  1. Rigid - 6
  2. Global rescale - 7
  3. Specific rescale - 9
  4. Affine - 12
 - Degrees of freedom
Cost function Correlation ratioOption
  1. Correlation ratio
  2. Least squares
  3. Normalized cross correlation
  4. Normalized mutual information
 - Cost function
Registration interpolation TrilinearOption
  1. Trilinear
  2. Bspline 3rd order
  3. Bspline 4th order
  4. Cubic Lagrangian
  5. Quintic Lagrangian
  6. Heptic Lagrangian
  7. Windowed sinc
 - Registration interpolation
Output interpolation TrilinearOption
  1. Trilinear
  2. Bspline 3rd order
  3. Bspline 4th order
  4. Cubic Lagrangian
  5. Quintic Lagrangian
  6. Heptic Lagrangian
  7. Windowed sinc
  8. Nearest Neighbor
 - Output interpolation
Apply rotation AllOption
  1. All
  2. X
  3. Y
  4. Z
 - Apply rotation
Minimum angle -30Double - Minimum angle
Maximum angle 30Double - Maximum angle
Coarse angle increment 15Double - Coarse angle increment
Fine angle increment 6Double - Fine angle increment
Multiple of tolerance to bracket the minimum 10Integer - Multiple of tolerance to bracket the minimum
Number of iterations 2Integer - Number of iterations
Number of minima from Level 8 to test at Level 4 3Integer - Number of minima from Level 8 to test at Level 4
Use the max of the min resolutions of the two datasets when resampling trueBoolean - Use the max of the min resolutions of the two datasets when resampling
Subsample image for speed trueBoolean - Subsample image for speed
Skip multilevel search (Assume images are close to alignment) falseBoolean - Skip multilevel search (Assume images are close to alignment)

Outputs

Name Type File Extension Description
Transformation Matrix Matrix - Transformation Matrix
Registered Volume Volume
  • dim{X,Y,Z,1}
  • type{any}
xml Registered Volume
Execution Time Performance - Execution Time

Authors

Citations


Last modified by VANDERBILT\landmaba on Thu, 21 Jan 2010 14:27:27 CST