Optimized Automatic Registration - Collection 1.11 RC (Optimized_Automatic_Registration_Collection)

IACL.Registration.Volume

[edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollection]

Description

Linear Registration algorithm based on FLIRT (registers a collection of images to the target).

Notes

Linear Registration algorithm based on FLIRT (registers a collection of images to the target). Finds a linear transformation bringing the source volume into the space of the target volume. Degrees of freedom can be specified.

Inputs

Name Default Type File Extension Description
Source Volumes
    		VolumeCollection - Source Volumes
    Target volume Target volumeVolume
    • dim{X,Y,Z,1}
    • type{any}
    		Supported Formats Target volume
    Reference Weighted volume (Optional) Reference Weighted volumeVolume
    • dim{X,Y,Z,1}
    • type{any}
    		Supported Formats Reference Weighted volume
    Input Weighted volume (Optional) Input Weighted volumeVolume
    • dim{X,Y,Z,1}
    • type{any}
    		Supported Formats Input Weighted volume
    Degrees of freedom Affine - 12Option
    1. Rigid - 6
    2. Global rescale - 7
    3. Specific rescale - 9
    4. Affine - 12
    		 - Degrees of freedom
    Cost function Correlation ratioOption
    1. Correlation ratio
    2. Least squares
    3. Normalized cross correlation
    4. Normalized mutual information
    		 - Cost function
    Registration interpolation TrilinearOption
    1. Trilinear
    2. Bspline 3rd order
    3. Bspline 4th order
    4. Cubic Lagrangian
    5. Quintic Lagrangian
    6. Heptic Lagrangian
    7. Windowed sinc
    		 - Registration interpolation
    Output interpolation TrilinearOption
    1. Trilinear
    2. Bspline 3rd order
    3. Bspline 4th order
    4. Cubic Lagrangian
    5. Quintic Lagrangian
    6. Heptic Lagrangian
    7. Windowed sinc
    8. Nearest Neighbor
    		 - Output interpolation
    Apply rotation AllOption
    1. All
    2. X
    3. Y
    4. Z
    		 - Apply rotation
    Minimum angle -30Double - Minimum angle
    Maximum angle 30Double - Maximum angle
    Coarse angle increment 15Double - Coarse angle increment
    Fine angle increment 6Double - Fine angle increment
    Multiple of tolerance to bracket the minimum 10Integer - Multiple of tolerance to bracket the minimum
    Number of iterations 2Integer - Number of iterations
    Number of minima from Level 8 to test at Level 4 3Integer - Number of minima from Level 8 to test at Level 4
    Use the max of the min resolutions of the two datasets when resampling trueBoolean - Use the max of the min resolutions of the two datasets when resampling
    Subsample image for speed trueBoolean - Subsample image for speed
    Skip multilevel search (Assume images are close to alignment) falseBoolean - Skip multilevel search (Assume images are close to alignment)

    Outputs

    Name Type File Extension Description
    Transformation Matrix (Optional) Matrix - Transformation Matrix
    Transformation Matrices (Optional) Object txt Transformation Matrices
    Transformations FileCollection - Transformations
    Registered Volumes VolumeCollection - Registered Volumes
    Execution Time Performance - Execution Time

    Authors

    Citations


    Last modified by VANDERBILT\landmaba on Thu, 21 Jan 2010 14:27:27 CST