Multiple Atlas Registrations via VABRA 1.6 alpha (MultiAtlasReg)

IACL.Registration.Volume

[edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmMultiAtlasReg]

Description

Registers N Atlases to a target image

Notes

This algorithm is used to register multiple atlases to the same target via multiple calls of single channel VABRA. Can be used with MultiDeformVolume to streamline multi-atlas labeling

Inputs

Name Default Type File Extension Description
Atlases
    		FileCollection - Atlases
    Target TargetVolume
    • dim{X,Y,Z,1}
    • type{any}
    		Supported Formats Target
    Output Only Deformation Fields falseBoolean - Output Only Deformation Fields
    Configuration /home/VANDERBILT/landmaba/jist/build/jist-bin-modules/edu/jhu/ece/iacl/algorithms/vabra/config.xmlFile - Configuration
    Type for Channel 1 0:TriLinearOption
    1. 0:TriLinear
    2. 1:NNI
    		 - Type for Channel 1
    Type for Channel 2 0:TriLinearOption
    1. 0:TriLinear
    2. 1:NNI
    		 - Type for Channel 2
    Type for Channel 3 0:TriLinearOption
    1. 0:TriLinear
    2. 1:NNI
    		 - Type for Channel 3
    Type for Remaining Channels (Use Index from Options Above) (Optional) NumberCollection - Type for Remaining Channels (Use Index from Options Above)
    Percentile of Image Above Robust Maximum (0.0-1.0) 0Double - Percentile of Image Above Robust Maximum (0.0-1.0)
    Percentile of Image Below Robust Minimum (0.0-1.0) 0Double - Percentile of Image Below Robust Minimum (0.0-1.0)
    Number of Bins used in Histogram 64Integer - Number of Bins used in Histogram
    First Run 9-DOF Affine Registration (FLIRT) trueBoolean - First Run 9-DOF Affine Registration (FLIRT)

    Outputs

    Name Type File Extension Description
    Registered Atlases (Optional) VolumeCollection - Registered Atlases
    Deformation Fields VolumeCollection - Deformation Fields
    Transformation Matrices (Optional) FileCollection - Transformation Matrices
    Execution Time Performance - Execution Time

    Authors

    Last modified by VANDERBILT\landmaba on Thu, 21 Jan 2010 14:27:27 CST