edu.jhu.ece.iacl.algorithms.manual_label
Class ROI

java.lang.Object
  edu.jhu.ece.iacl.algorithms.manual_label.LabelImage
      edu.jhu.ece.iacl.algorithms.manual_label.ROI

public class ROI
extends LabelImage

Field Summary

Fields inherited from class edu.jhu.ece.iacl.algorithms.manual_label.LabelImage

allComparisonHits, allhits, img, name, resX, resY, resZ, revnum, searched

Constructor Summary

ROI()

ROI(ImageData img)

ROI(ImageData img, ImageData testimg)

Method Summary

java.lang.Number[]	applyROINum(int label)
void	computeMask(int label)
FiberCollection	fiberroi(FiberCollection tractin, int op, int label) A method to parcellate fibers based to DTIStudio like regions of interest ROIs
java.lang.String	getData()
ImageData	getMaskedVol()
Vector3[]	getROIdata(int label)
ImageData	getSubsetDTISformat(ImageData vec, ImageData mask, java.lang.Number target)
ImageData	getSubsetMIPAVformat(ImageData vec, ImageData mask, java.lang.Number target)
ImageData	getTestVolume()
void	setTestVolume(ImageData vol)

Methods inherited from class edu.jhu.ece.iacl.algorithms.manual_label.LabelImage

computeStatistics, discreteLabelsFromMemberships, discreteLabelsFromMemberships, fleissReliability, get_version, getCombinedLabelList, getDims, getHitIndex, getImg, getlabCM, getLabelImageList, getLabelList, getLabelVolume, getlabset, getlabsetArray, getLastComparisonHits, getName, getPt, getVal, getVal, isinBounds, isPtinBounds, isPtinBounds, meanDists, meanDists, oneWayHausdorffDistance, organizeLabels, runAllComparisons, runCenterOfMasses, runCMDistance, runHausdorfDistance, runMeanDistance, runVolumes, sameDims, separateLabels, setimg, setRes, setVal, setVal, unifyMasks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ROI

public ROI()

ROI

public ROI(ImageData img)

ROI

public ROI(ImageData img,
           ImageData testimg)

Method Detail

setTestVolume

public void setTestVolume(ImageData vol)

getTestVolume

public ImageData getTestVolume()

applyROINum

public java.lang.Number[] applyROINum(int label)

getROIdata

public Vector3[] getROIdata(int label)

computeMask

public void computeMask(int label)

getSubsetDTISformat

public ImageData getSubsetDTISformat(ImageData vec,
                                     ImageData mask,
                                     java.lang.Number target)

getSubsetMIPAVformat

public ImageData getSubsetMIPAVformat(ImageData vec,
                                      ImageData mask,
                                      java.lang.Number target)

fiberroi

public FiberCollection fiberroi(FiberCollection tractin,
                                int op,
                                int label)

A method to parcellate fibers based to DTIStudio like regions of interest ROIs

Parameters:

tractin - The fibercollection containing the fibers to be chosen

op - The operation to be applied 0-OR, 1-NOT

label - The label of interest. (-1 indicates all labels >0

Returns:

A FiberCollection containing the chosen fibers

getMaskedVol

public ImageData getMaskedVol()

getData

public java.lang.String getData()