All Classes

AbstractCalculation AddingNoise AddToFileCollection AlgorithmComputeVolumeHistogram AlgorithmDWIMotionCorrection AlgorithmGradientTableCorrection AlgorithmInformation AlgorithmInformation.AlgorithmAuthor AlgorithmInformation.Citation AlgorithmInformationDialog AlgorithmInformationDialog.AuthorDialog AlgorithmInformationDialog.AuthorListBox AlgorithmInformationDialog.CitationDialog AlgorithmInformationDialog.CitationListBox AlgorithmJointROIStats AlgorithmLogOdds AlgorithmROIStats AlgorithmRuntimeException AlgorithmSimulateSurfaceRater AlgorithmSimulateVolumeRater AlgorithmVolumeFileCollectionTo3D AnalyzeDists ArrayDoubleDxReaderWriter ArrayDoubleListTxtReaderWriter ArrayDoubleMtxReaderWriter ArrayDoubleReaderWriter ArrayDoubleTxtReaderWriter ArrayIntegerDxReaderWriter ArrayIntegerReaderWriter ArrayIntegerTxtReaderWriter ArrayObjectTxtReaderWriter ArrayPrinter AvoidanceRouting AvoidanceRouting.Dir BASIS_TYPE BinaryMaxHeap BinaryMinFastHeap BinaryMinHeap BndBox BrentMethod1D CalculationMonitor CFARIBasisFunction CFARIBasisSet CFARIBasisTensor CFARIEstimation CFARIEstimation2 CFARIEstimator CFARIEstimator2 ChebyShevFitting CollisionDetection CollisionDetection.Triangle CombinedSlabCollectionToVolumeCollection CompareFibers CompatibilityChecker ComplexMatrix ComplexVector ComputeMeanB0 ComputeTensorContrasts ConfusionMatrix ConnectionEditor ConnectorRenderer ConvolutionArrayKernel ConvolutionVolumeKernel cPT CreateCrossingFiber CreateMask CreatePlatonicSolidSurface CreateTesselatedSurface CropParameters CropVolume CubicVolumeCropper CubicVolumeReaderWriter Curve CurveCollection CurvePath CurveVtkReaderWriter DataLabel DataLabelCollection DefineCFARIScheme DegenerateIntersectionException DevelopmentStatus DiffusionTensor discover DispatchController DistanceField DivideReference DocMediaWikiWriter DocumentAllModules DocumentAllModules.CompareFactories DocumentGenerator DocumentGeneratorHTML DownhillSimplexND DraggableJTree DraggableNode DTEMRLTensor DTIGradientTableCreator DTISFiberWriter DTIStudioHDR DTIStudioReader DTISVecReader DtisVsIacl DtiVecMask DWIBallStickEstCamino DWIBallStickEstCaminoFileCollection DWICoReg DWIDefineCaminoScheme DWITensorColorEncodedMap DWITensorContrasts DWITensorEstCamino DWITensorEstCaminoFileCollection DWITensorEstLikelihood DWITensorEstLLMSE DWIThreeTensorEstCamino DWIThreeTensorEstCaminoFileCollection DWITwoTensorEstCamino DWITwoTensorEstCaminoFileCollection DxDataWriter DxDataWriter DXFiberData DxFiberReaderWriter DxReader DxSurfaceReader DxSurfaceWriter DxWriter Edge EdgeIndexed EmbeddedCurvePath EmbeddedPointSet EmbeddedSurface EmbeddedSurface.Direction EmbeddedSurface.Edge EmbeddedSurface.EdgeSplit EmbeddedSurface.Face EstimateTensorLikelihood EstimateTensorLLMSE ExecutionContext ExecutionContext.ContextListener ExecutionContext.Status ExecutionContext.Update ExtractBvalGradFromPAR ExtractPARGradientTable Face FACT_INFACTcompare FACTapi FACTfiber FACTparameters FastMarchingLabelExtension Fiber Fiber2Volume FiberCollection FiberCollectionReaderWriter FiberComparator FiberConverter FiberScaler FiberStatistics FiberTracker FiberTransformation FieldRegularize FileCollectionToPins FileConverter FileExtensionFilter FileReaderWriter FileUtil FirstPluginTest FloatInterp FreeSurferAsciiReader FreeSurferAsciiWriter FreeSurferReader FreeSurferWriter FunctionExponential FunctionNegativeXSquared FunctionNegativeXSquaredND FunctionNumeric1DDifferentiation FunctionNumericND1DDifferentiation FunctionNumericNDDifferentiation FunctionRosenbrock FunctionXSquared FunctionXSquaredND FunctionXXplusSinXX FunctionXXplusSinXXND FunctionXXYYND GaussianArrayKernel GaussianVolumeKernel GenerateTensors GeomUtil GetImageDimensions GlobalPreferencePanel GoldenSectionSearch1D GradientTable GradTableCorrection GradToSurf GridPt GridPt.Connectivity GTCparams HistogramGenerator ImageAlgebra ImageArithmetic ImageData ImageDataColor ImageDataDouble ImageDataFloat ImageDataInt ImageDataMath ImageDataMipav ImageDataNumber ImageDataUByte ImageHeader ImageHeader.AxisOrientation ImageHeader.Compression ImageHeader.Endianess ImageHeader.ImageModality ImageHeader.ImageOrientation ImageHeader.MeasurementUnit ImageUtil Indexable InformationListBox IntersectResult InvalidParameterException InvalidParameterValueException IsotropicResample IsotropicResample.InterpolationMethod JDialogSaveAll JGraphFoldingManager JistCLI JISTInternalParam JistLayoutParser JistLayoutReaderWriter JISTLicenseAbout JistPluginUtil JistPreferences JistPreferences.NamingConvention JistPreferences.PreferenceListener JistTestHarness KLDivergence L1LSCompressedSensing L1LSCompressedSensingNonNeg L1LSCompressedSensingUnconstrained LabelImage LabelImageGroup LayoutPanel LayoutPreferencePanel LEFileReader LEFileWriter Legendre LevenbergMarquardt LineSearchND LineSearchNDDifferentiable LocalNoiseEstimate LogOdds LoniPipeParser MaskVolume MaskVolume18 MaskVolume26 MaskVolume6 Matrix2 Matrix3 MatrixMath MatrixX MedicAlgorithmAddToVolCollection MedicAlgorithmAppendBvals MedicAlgorithmAppendGradientTable MedicAlgorithmApplyFiberROI MedicAlgorithmArithmetic MedicAlgorithmChooseFileRegEx MedicAlgorithmChooseVolumeRegEx MedicAlgorithmCombineSubimages MedicAlgorithmCombineSurfaceComponents MedicAlgorithmCombineSurfaces MedicAlgorithmCombineVolumeComponents MedicAlgorithmCombineVolumes MedicAlgorithmConcatArrayDoubleTextLists MedicAlgorithmConcatMultiImages MedicAlgorithmConstrainedFLIRT MedicAlgorithmConstrainedFLIRT.AlgorithmConstrainedOAR3DWrapper MedicAlgorithmCopyEmbeddedData MedicAlgorithmCrop MedicAlgorithmDeformFibers MedicAlgorithmDemo MedicAlgorithmDemo.MyAlgorithm MedicAlgorithmDimensions MedicAlgorithmEfficientFileCollectionRegistration MedicAlgorithmEmbedSurface MedicAlgorithmExecutableAdapter MedicAlgorithmExtractAllComponents MedicAlgorithmExtractB0 MedicAlgorithmExtractFileCollectionComponents MedicAlgorithmExtractSurfaceComponent MedicAlgorithmExtractVolumeComponent MedicAlgorithmFiberComparison MedicAlgorithmFibersFromSurfaceROI MedicAlgorithmFibersToVtk MedicAlgorithmFiberTracker MedicAlgorithmFiberVolumeStatistics MedicAlgorithmFindEqualVolume MedicAlgorithmFlipVectorTable MedicAlgorithmFlipVectorVolume MedicAlgorithmFLIRTCollection MedicAlgorithmFLIRTCollection.AlgorithmRegOAR3DWrapper MedicAlgorithmFloatsToPoint MedicAlgorithmFMLabelExtension MedicAlgorithmFormatVectorImage MedicAlgorithmIdentifySubject MedicAlgorithmImageCalculator MedicAlgorithmImageCalculatorBatch MedicAlgorithmImageCalculatorModified MedicAlgorithmImageMath MedicAlgorithmIsotropicReslice MedicAlgorithmJistLayoutAdapter MedicAlgorithmKLDivergence MedicAlgorithmMaskVectorImage MedicAlgorithmMatchAllImages MedicAlgorithmMath MedicAlgorithmMipavAdapter MedicAlgorithmMultiCrop MedicAlgorithmMultiGradientTableCreator MedicAlgorithmMultiParV3Info MedicAlgorithmMultiParV4Info MedicAlgorithmReshapePoints MedicAlgorithmReshapeSurface MedicAlgorithmReverseComponents MedicAlgorithmSerializeSurfaces MedicAlgorithmSerializeVolumes MedicAlgorithmSetHeaders MedicAlgorithmSlabsToVolume MedicAlgorithmSplitImage MedicAlgorithmSTAPLE MedicAlgorithmSTAPLEgeneral MedicAlgorithmSTAPLEsurface MedicAlgorithmSurfaceConverter MedicAlgorithmSurfaceHistogram MedicAlgorithmSurfaceSplitter MedicAlgorithmSurfaceToVolumeConverter MedicAlgorithmTableFormat MedicAlgorithmTensorFormatConvert MedicAlgorithmThreshold MedicAlgorithmTransformFibers MedicAlgorithmTransformVolume MedicAlgorithmUncrop MedicAlgorithmValueEquals MedicAlgorithmValueGreaterThan MedicAlgorithmValueInRange MedicAlgorithmValueLessThan MedicAlgorithmVolumeConverter MedicAlgorithmVolumeConverter2 MedicAlgorithmVolumeConverter4D MedicAlgorithmVolumeHistogram MedicAlgorithmVolumeListOrganizer MedicAlgorithmVolumeSplitter MedicAlgorithmVolumeToSlabs MedicAlgorithmZip MedicUtil MinToMax1D MinToMax1DDifferentiable MinToMaxND MinToMaxNDDifferentiable MipavController MipavFileVOI MipavScriptParser MipavScriptRunner MipavSurfaceReader MipavSurfaceXMLReader MipavSurfaceXMLWriter MipavTestHarness MipavViewUserInterface MipavVOI MLTensor ModelImageReaderWriter ModuleTreePanel ModuleTreePanel.DraggableTreeCellRenderer NewtonMethod1D NIA4Dto3dFileCollection NormalGenerator NormalizeToUnitMagnitude ObjectCollection ObservableCalculation Optimizable1DContinuous Optimizable1DContinuousDifferentiable OptimizableNDContinuous OptimizableNDContinuousDifferentiable Optimizer1DContinuous Optimizer1DContinuousDifferentiable OptimizerNDContinuous OptimizerNDContinuousDifferentiable OptimizeTensor PackageNode ParamArgsOrder ParamBoolean ParamBooleanFactory ParamBooleanInputView ParamCollection ParamCollectionFactory ParamCollectionInputView ParamCollectionOutputView ParamCollectionPaneInputView ParamCollectionPipelineInputView ParamCollectionWindowInputView ParamDataLabel ParamDataLabelFactory ParamDataLabelInputView ParamDouble ParamDoubleFactory ParameterPanel ParamExecutable ParamFactory ParamFile ParamFile.DialogType ParamFileCollection ParamFileCollectionFactory ParamFileCollectionInputView ParamFileCollectionOutputView ParamFileFactory ParamFileInputView ParamFloat ParamFloatFactory ParamHeader ParamHeaderFactory ParamHidden ParamHiddenFactory ParamHiddenInputView ParamInformation ParamInformationFactory ParamInformationInputView ParamInputView ParamInteger ParamIntegerFactory ParamLong ParamLongFactory ParamMatrix ParamMatrixFactory ParamMatrixInputView ParamMipavDialog ParamMipavDialogFactory ParamMipavDialogInputView ParamModel ParamMultiOption ParamMultiOptionFactory ParamMultiOptionInputView ParamNumber ParamNumberCollection ParamNumberCollectionFactory ParamNumberCollectionInputView ParamNumberCollectionOutputView ParamNumberSliderInputView ParamNumberSpinnerInputView ParamNumberTextInputView ParamObject ParamObjectFactory ParamOption ParamOptionCollectionInputView ParamOptionFactory ParamOptionInputView ParamOutputView ParamPerformance ParamPerformanceFactory ParamPoint ParamPointDouble ParamPointDoubleFactory ParamPointDoubleTextInputView ParamPointFloat ParamPointFloatFactory ParamPointFloatTextInputView ParamPointInteger ParamPointIntegerFactory ParamPointSpinnerInputView ParamString ParamStringFactory ParamSurface ParamSurfaceCollection ParamSurfaceCollectionFactory ParamSurfaceFactory ParamSurfaceLocation ParamSurfaceLocationCollection ParamSurfaceOutputView ParamSwitch ParamTextInputView ParamURIInputView ParamViewObserver ParamVolume ParamVolumeCollection ParamVolumeCollectionFactory ParamVolumeCollectionInputView ParamVolumeCollectionOutputView ParamVolumeFactory ParamVolumeInputView ParamVolumeInputView.VolumeListBoxItem ParamVolumeLocation ParamVolumeLocationCollection ParamVolumeOutputView ParamVolumeURICollectionInputView ParamVolumeURIInputView ParamVolumeURIInputView.VolumeListBoxItem ParamWeightedVolume ParamWeightedVolumeCollection ParamWeightedVolumeCollectionFactory ParamWeightedVolumesInputView ParamWeightedVolumesURIInputView ParV3Info ParV4Info PerformanceLevel PerformanceSummary PerformanceSummary.TimeAndMemoryStamp PipeAlgorithm PipeAlgorithmFactory PipeAlgorithmFactory.AlgorithmCell PipeAlgorithmFactory.AlgorithmGroupCell PipeAlgorithmFactory.AlgorithmGroupNode PipeAlgorithmFactory.AlgorithmNode PipeAlgorithmGroup PipeAlgorithmGroupView PipeAlgorithmGroupView.ActivityRenderer PipeAlgorithmView PipeAlgorithmView.ActivityRenderer PipeAssertionTestDestination PipeCellViewFactory PipeChildPort PipeConnector PipeDestination PipeDestinationFactory PipeDestinationFactory.DestinationCell PipeDestinationFactory.DestinationNode PipeDestinationView PipeDestinationView.ActivityRenderer PipeDoubleExternalDestination PipeDoubleExternalSource PipeDoubleListSource PipeDoubleSweepSource PipeEdgeEditor PipeEdgeRealEditor PipeEdgeView PipeExternalDestination PipeExternalSource PipeFileCollectionListSource PipeFileCollectionSource PipeFileDirectorySource PipeFileListSource PipeGraphModel PipeGraphUI PipeIntegerExternalDestination PipeIntegerExternalSource PipeIntegerListSource PipeIntegerSweepSource PipeInternalFrame PipeJGraph PipeLayout PipeLayout.RunParameters PipeLayoutRunner PipeLibrary PipeLibrary.CompareFactories PipeLibrary.CompareFiles PipeLibrary.InitializeTask PipeLibrary.RebuildTask PipelineLayoutTool PipeListSource PipeLogic PipeMarqueeHandler PipeModule PipeModule.PipeListener PipeModuleCell PipeModuleEdge PipeModuleFactory PipeModulePort PipeParamCopyDestination PipeParamSummaryDestination PipeParentPort PipePointDoubleSweepSource PipePointListSource PipePort PipePort.PortListener PipePort.type PipePortView PipeRunner PipeScheduler PipeSelectionExternalSource PipeSelectionListSource PipeSelectionSource PipeSource PipeSourceFactory PipeSourceFactory.SourceCell PipeSourceFactory.SourceNode PipeSourceView PipeSourceView.ActivityRenderer PipeStringListSource PipeSurfaceCollectionExternalDestination PipeSurfaceCollectionListSource PipeSurfaceCollectionSource PipeSurfaceDirectorySurface PipeSurfaceExternalDestination PipeSurfaceExternalSource PipeSurfaceListSource PipeToggleSource PipeVolumeCollectionExternalDestination PipeVolumeCollectionListSource PipeVolumeCollectionSource PipeVolumeDirectoryCollectionSource PipeVolumeDirectorySource PipeVolumeExternalDestination PipeVolumeExternalSource PipeVolumeListSource PlaceHolder PlugInJISTLayoutTool PlugInJISTPlugInSelector PlugInJISTProcessManager PlugInSelector Point3 Point3fMath PointSetVtkReaderWriter Polygon Polyhedron PolySpline PortChildView PortComboBox PortInputView PortListBox PortOutputView PortParentView PortToggleButton ProcessControlAction ProcessController ProcessControllerDRMAA ProcessControllerNative ProcessDebugInfoFrame ProcessInfoPanel ProcessingAlgorithm ProcessingApplication ProcessingDialog ProcessingGroupDialog ProcessManager ProcessManagerTable ProcessManagerTable.MemoryStampWrapper ProcessManagerTable.TimeStampWrapper ProcessNode ProcessNode.Hierarchy ProcessStatus ProjectNDto1DOptimizable ProjectNDto1DOptimizableDifferentiable PT QBall QBallEstimation QBallProjection RandomVol RawReader RawWriter Refreshable Refresher RegularizeNoiseField ReverseComparator RGB RGB RibbonVtkReaderWriter ROI ROIReader RotationMatrix run RunFACT runLayout RunSTAPLE ScaleImageDemo ScriptParser ScriptReader Segment SelectUniqueDiffusionDirections SFunc SimFramework SmileAlgorithmDemo SphericalHarmonicRepresentation SphericalHarmonics STAPLE STAPLEgeneral STAPLEgeneralSingle STAPLEmulti StaplePlugin StapleReader STAPLEsingle STAPLEsurf StapleTester StartJIST StartJISTLayoutTool StartJISTProcessManager StatisticsDouble StringArrayToStringXML StringArrayXMLReaderWriter StringReaderWriter Surface SurfaceBrainSuiteReaderWriter SurfaceDxReaderWriter SurfaceFreeSurferReaderWriter SurfaceMipavReaderWriter SurfaceRater SurfaceReaderWriter SurfaceTools SurfaceVrmlReaderWriter SurfaceVtkReaderWriter SurfToGrad Tensor2 Tensor3 TensorX TesselateSurface test Test1DOptimizations TestDerivativeFunction TestDXWriting testFACT TestNDOptimizations TextFileReader Tract Triangle TriangleFace TriangleSigned TriangleSurface triangulate USbyte USbyte VEC Vector2 Vector3 Vector3 Vector4 VectorMatrixX VectorN VectorX VersionUtil Vertex VertexDoubleDxReaderWriter VertexFloatDxReaderWriter VertexIndexed VOIReaderWriter VolumeCollectionToCombinedSlabCollection VolumeDirectoryNoIter VolumeRater VolumeVtkReaderWriter Voxel VoxelBoolean VoxelColor VoxelDouble VoxelFloat VoxelIndexed VoxelInt VoxelMipav VoxelShort VoxelType VoxelUByte VoxelVector XMLErrorHandler XYZ ZipFileReaderWriter