edu.jhu.ece.iacl.plugins.dti
Class MedicAlgorithmExtractB0

java.lang.Object
  AlgorithmBase
      edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmExtractB0

public class MedicAlgorithmExtractB0
extends ProcessingAlgorithm

This module finds the ith b0 image from a diffusion weighted volume

Author:

John Bogovic

Field Summary

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess

Constructor Summary

MedicAlgorithmExtractB0()

Method Summary

protected void	createInputParameters(ParamCollection inputParams) Create input parameters.
protected void	createOutputParameters(ParamCollection outputParams) Create output parameters.
protected void	execute(CalculationMonitor monitor) Execute your algorithm.

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getDefaultJVMArgs, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, init, init, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MedicAlgorithmExtractB0

public MedicAlgorithmExtractB0()

Method Detail

createInputParameters

protected void createInputParameters(ParamCollection inputParams)

Description copied from class: ProcessingAlgorithm

Create input parameters.

Specified by:

createInputParameters in class ProcessingAlgorithm

Parameters:

inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)

Description copied from class: ProcessingAlgorithm

Create output parameters.

Specified by:

createOutputParameters in class ProcessingAlgorithm

Parameters:

outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)
                throws AlgorithmRuntimeException

Description copied from class: ProcessingAlgorithm

Execute your algorithm.

Specified by:

execute in class ProcessingAlgorithm

Parameters:

monitor - progress monitor

Throws:

AlgorithmRuntimeException - the algorithm runtime exception