edu.jhu.ece.iacl.algorithms.dti.tractography.FACT
Class FACTapi

java.lang.Object
  edu.jhu.ece.iacl.algorithms.dti.tractography.FACT.FACTapi

public class FACTapi
extends java.lang.Object

Constructor Summary

FACTapi()

Method Summary

java.util.List	findFibersByPoints(cPT[] pts)
java.util.Vector	getFibers()
FACTparameters	getParameters()
void	hello()
boolean	loadData(java.lang.String faFile, java.lang.String vecFile, int setNx, int setNy, int setNz, double setResX, double setResY, double setResZ)
void	mySize(java.lang.Double[] d)
int	readLEInt(java.io.InputStream in)
boolean	readParamFile(java.lang.String file)
boolean	setParameters(float setStopFA, float setMaxTurnAng, float setStartFA)
Fiber[]	toFiberArray()
FiberCollection	toFiberCollection()
int	trackAllFibers()
int	trackFromSeed(int k, int j, int i)
void	writeFibers(java.lang.String filename)
void	writeFibersVTK(java.lang.String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FACTapi

public FACTapi()

Method Detail

hello

public void hello()

mySize

public void mySize(java.lang.Double[] d)

getParameters

public FACTparameters getParameters()

getFibers

public java.util.Vector getFibers()

setParameters

public boolean setParameters(float setStopFA,
                             float setMaxTurnAng,
                             float setStartFA)

readParamFile

public boolean readParamFile(java.lang.String file)

readLEInt

public int readLEInt(java.io.InputStream in)
              throws java.io.IOException

Throws:

java.io.IOException

loadData

public boolean loadData(java.lang.String faFile,
                        java.lang.String vecFile,
                        int setNx,
                        int setNy,
                        int setNz,
                        double setResX,
                        double setResY,
                        double setResZ)

trackAllFibers

public int trackAllFibers()

trackFromSeed

public int trackFromSeed(int k,
                         int j,
                         int i)

findFibersByPoints

public java.util.List findFibersByPoints(cPT[] pts)

toFiberCollection

public FiberCollection toFiberCollection()

toFiberArray

public Fiber[] toFiberArray()

writeFibers

public void writeFibers(java.lang.String filename)

writeFibersVTK

public void writeFibersVTK(java.lang.String filename)