edu.jhu.ece.iacl.jist.structures.fiber
Class Fiber

java.lang.Object
  edu.jhu.ece.iacl.jist.structures.fiber.Fiber

public class Fiber
extends java.lang.Object

The Class Fiber.

Constructor Summary

Fiber()
Instantiates a new fiber.

Fiber(XYZ[] chain)
Instantiates a new fiber.

Method Summary

boolean	equals(Fiber a) Equals.
static Fiber[]	fromVector(java.util.Vector<Fiber> vect) From vector.
XYZ[]	getChain() Gets the chain.
RGB	getColor() Gets the color.
int	getLength() Gets the length.
double	getMarker(int pt) Gets the marker.
int	getseedPointIndex() Gets the seed point index.
int	getseedPointIndex2() Gets the seed point index2.
XYZ[]	getXYZChain() Gets the xYZ chain.
boolean	intersects(Polygon p) Intersects.
double	length(double resX, double resY, double resZ) Length.
static Fiber[]	makeFibersInBounds(Fiber[] in, int maxx, int maxy, int maxz) Make fibers in bounds.
void	makeInBounds(int maxx, int maxy, int maxz) Make in bounds.
void	read(LEFileReader fp, int version) Read.
IntersectResult	reportiIntersect(Polygon p) Reporti intersect.
static Fiber[]	scaleForVisualization(Fiber[] in, float xs, float ys, float zs) Scale for visualization.
Fiber	scaleForVisualization(float xs, float ys, float zs) Scale for visualization.
void	setMarkerPoint(double marker, int pt) Sets the marker point.
CurvePath	toCurvePath() To curve path.
java.lang.String	toString()
boolean[][][]	toVolume(int[] dims) To volume.
static void	writeVTK(Fiber[] writeme, java.lang.String filename) Write vtk.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Fiber

public Fiber()

Instantiates a new fiber.

Fiber

public Fiber(XYZ[] chain)

Instantiates a new fiber.

Parameters:

chain - the chain

Method Detail

read

public void read(LEFileReader fp,
                 int version)
          throws java.io.IOException

Read.

Parameters:

fp - the fp

version - the version

Throws:

java.io.IOException - Signals that an I/O exception has occurred.

getLength

public int getLength()

Gets the length.

Returns:

the length

getChain

public XYZ[] getChain()

Gets the chain.

Returns:

the chain

getColor

public RGB getColor()

Gets the color.

Returns:

the color

intersects

public boolean intersects(Polygon p)

Intersects.

Parameters:

p - the p

Returns:

true, if successful

reportiIntersect

public IntersectResult reportiIntersect(Polygon p)

Reporti intersect.

Parameters:

p - the p

Returns:

the intersect result

setMarkerPoint

public void setMarkerPoint(double marker,
                           int pt)

Sets the marker point.

Parameters:

marker - the marker

pt - the pt

getMarker

public double getMarker(int pt)

Gets the marker.

Parameters:

pt - the pt

Returns:

the marker

getXYZChain

public XYZ[] getXYZChain()

Gets the xYZ chain.

Returns:

the xYZ chain

equals

public boolean equals(Fiber a)

Equals.

Parameters:

a - the a

Returns:

true, if successful

getseedPointIndex

public int getseedPointIndex()

Gets the seed point index.

Returns:

the seed point index

getseedPointIndex2

public int getseedPointIndex2()

Gets the seed point index2.

Returns:

the seed point index2

toVolume

public boolean[][][] toVolume(int[] dims)

To volume.

Parameters:

dims - the dims

Returns:

the boolean[][][]

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

toCurvePath

public CurvePath toCurvePath()

To curve path.

Returns:

the curve path

length

public double length(double resX,
                     double resY,
                     double resZ)

Length.

Parameters:

resX - the res x

resY - the res y

resZ - the res z

Returns:

the double

scaleForVisualization

public Fiber scaleForVisualization(float xs,
                                   float ys,
                                   float zs)

Scale for visualization.

Parameters:

xs - the xs

ys - the ys

zs - the zs

Returns:

the fiber

scaleForVisualization

public static Fiber[] scaleForVisualization(Fiber[] in,
                                            float xs,
                                            float ys,
                                            float zs)

Scale for visualization.

Parameters:

in - the in

xs - the xs

ys - the ys

zs - the zs

Returns:

the fiber[]

makeInBounds

public void makeInBounds(int maxx,
                         int maxy,
                         int maxz)

Make in bounds.

Parameters:

maxx - the maxx

maxy - the maxy

maxz - the maxz

makeFibersInBounds

public static Fiber[] makeFibersInBounds(Fiber[] in,
                                         int maxx,
                                         int maxy,
                                         int maxz)

Make fibers in bounds.

Parameters:

in - the in

maxx - the maxx

maxy - the maxy

maxz - the maxz

Returns:

the fiber[]

fromVector

public static Fiber[] fromVector(java.util.Vector<Fiber> vect)

From vector.

Parameters:

vect - the vect

Returns:

the fiber[]

writeVTK

public static void writeVTK(Fiber[] writeme,
                            java.lang.String filename)

Write vtk.

Parameters:

writeme - the writeme

filename - the filename