edu.jhu.ece.iacl.plugins.utilities.surface
Class MedicAlgorithmSurfaceHistogram

java.lang.Object
  AlgorithmBase
      edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          edu.jhu.ece.iacl.plugins.utilities.surface.MedicAlgorithmSurfaceHistogram

public class MedicAlgorithmSurfaceHistogram
extends ProcessingAlgorithm

Field Summary

protected ParamBoolean	autoMinMax
protected ParamInteger	bins
protected ParamInteger	cols
protected ParamOption	embeddedDataType
protected ParamVolume	histImg
protected ParamObject<double[][]>	histogram
protected ParamInteger	index
protected ParamBoolean	logScale
protected ParamDouble	max
protected ParamDouble	min
protected ParamBoolean	robustMinMax
protected ParamInteger	rows
protected ParamSurface	surf
protected ParamString	valueName
protected ParamBoolean	yLogScale

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess

Constructor Summary

MedicAlgorithmSurfaceHistogram()

Method Summary

protected void	createInputParameters(ParamCollection inputParams) Create input parameters.
protected void	createOutputParameters(ParamCollection outputParams) Create output parameters.
protected void	execute(CalculationMonitor monitor) Execute your algorithm.

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getDefaultJVMArgs, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, init, init, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

surf

protected ParamSurface surf

bins

protected ParamInteger bins

index

protected ParamInteger index

min

protected ParamDouble min

max

protected ParamDouble max

logScale

protected ParamBoolean logScale

autoMinMax

protected ParamBoolean autoMinMax

robustMinMax

protected ParamBoolean robustMinMax

yLogScale

protected ParamBoolean yLogScale

valueName

protected ParamString valueName

rows

protected ParamInteger rows

cols

protected ParamInteger cols

histogram

protected ParamObject<double[][]> histogram

histImg

protected ParamVolume histImg

embeddedDataType

protected ParamOption embeddedDataType

Constructor Detail

MedicAlgorithmSurfaceHistogram

public MedicAlgorithmSurfaceHistogram()

Method Detail

createInputParameters

protected void createInputParameters(ParamCollection inputParams)

Description copied from class: ProcessingAlgorithm

Create input parameters.

Specified by:

createInputParameters in class ProcessingAlgorithm

Parameters:

inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)

Description copied from class: ProcessingAlgorithm

Create output parameters.

Specified by:

createOutputParameters in class ProcessingAlgorithm

Parameters:

outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)
                throws AlgorithmRuntimeException

Description copied from class: ProcessingAlgorithm

Execute your algorithm.

Specified by:

execute in class ProcessingAlgorithm

Parameters:

monitor - progress monitor

Throws:

AlgorithmRuntimeException - the algorithm runtime exception