edu.jhu.ece.iacl.jist.io
Class MipavFileVOI

java.lang.Object
  FileVOI
      edu.jhu.ece.iacl.jist.io.MipavFileVOI

public class MipavFileVOI
extends FileVOI

VOI reader/writer. This classes incorporates the ability to write/read VOIs in three formats (MIPAV *.voi, Nuages, and MIPAV *.Xml . The first is a simple text format in which the points of the VOIs are stored in text format. The VOIs can be also stored in a second format, also a text format, termed a Nauges. Nauges is a program that forms triangles (i.e., tesselates) from contours. Therefore, if one wishes to render a surface of a VOI, first save the VOI in Nauges format and supply the VOI file to the Nauges executable. MIPAV's lastest file format is based on XML and should be used in the future.

Note: A single VOI per file. However, a VOI can be formed from multiple contours.

Version:

0.1 Feb 24, 1998

Author:

Matthew J. McAuliffe, Ph.D.

See Also:

VOI

Constructor Summary

MipavFileVOI(java.lang.String fName, java.lang.String fDir, ModelImage img)
Instantiates a new mipav file voi.

Method Summary

static void	fileToPatient(Vector3f pIn, Vector3f pOut, ModelStorageBase image, int orientation, boolean bFlip) File to patient.
static void	fileToScanner(Vector3f kInput, Vector3f kOutput, ModelImage kImage) File to scanner.
void	writeXML(VOI voi, boolean saveAllContours)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MipavFileVOI

public MipavFileVOI(java.lang.String fName,
                    java.lang.String fDir,
                    ModelImage img)
             throws java.io.IOException

Instantiates a new mipav file voi.

Parameters:

fName - the f name

fDir - the f dir

img - the img

Throws:

java.io.IOException - Signals that an I/O exception has occurred.

Method Detail

writeXML

public void writeXML(VOI voi,
                     boolean saveAllContours)
              throws java.io.IOException

Throws:

java.io.IOException

fileToScanner

public static final void fileToScanner(Vector3f kInput,
                                       Vector3f kOutput,
                                       ModelImage kImage)

File to scanner.

Parameters:

kInput - the k input

kOutput - the k output

kImage - the k image

fileToPatient

public static final void fileToPatient(Vector3f pIn,
                                       Vector3f pOut,
                                       ModelStorageBase image,
                                       int orientation,
                                       boolean bFlip)

File to patient.

Parameters:

pIn - the in

pOut - the out

image - the image

orientation - the orientation

bFlip - the b flip