edu.jhu.ece.iacl.algorithms.manual_label.staple
Class STAPLEgeneral

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.manual_label.staple.STAPLEgeneral

public class STAPLEgeneral
extends AbstractCalculation

Field Summary

protected float	beta
protected double	convergesum
protected java.lang.String	dir
protected double	eps
protected java.lang.String	init
protected java.util.ArrayList<java.lang.Number>	labels
protected int	maxiters
protected int	mrfiters
protected java.lang.String	mrfMethod
protected float	normtrace
protected int	offset
protected PerformanceLevel	pl
protected java.util.ArrayList<java.lang.Float>	priors
protected float	sigma

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

STAPLEgeneral()

STAPLEgeneral(java.util.ArrayList<double[][]> data)

STAPLEgeneral(java.util.ArrayList<double[][]> data, int offset)

Method Summary

void	combineAllRaterLabs()
double[][]	combineRaterLabels(double[][] raterin)
java.util.ArrayList<double[][]>	deepCloneTruth()
void	Estep()
void	findLabels()
double[][]	getHardSeg()
int	getIndex(java.util.ArrayList<java.lang.Number> l, java.lang.Number n)
java.util.ArrayList<java.lang.Number>	getLabels()
PerformanceLevel	getPeformanceLevel()
java.lang.String	getPerformanceLevels()
void	getPriorProb()
java.util.ArrayList<double[][]>	getTruth()
void	initialize()
void	iterate()
void	mrfICM(int iters) Attempt to solve the MRF using Iterated Conditional Modes
void	mrfRL(int iters) Attempt to solve the MRF using a Relaxation Labeling technique
void	Mstep()
void	printPerformanceLevels()
void	setBeta(float beta)
void	setData(java.util.ArrayList<double[][]> data)
void	setDir(java.lang.String dir)
void	setEps(double eps)
void	setInit(java.lang.String init)
void	setmaxIters(int max)
void	setSigma(float sigma)
void	setSurface(EmbeddedSurface surf)
boolean	verifySizes()

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

pl

protected PerformanceLevel pl

priors

protected java.util.ArrayList<java.lang.Float> priors

labels

protected java.util.ArrayList<java.lang.Number> labels

convergesum

protected double convergesum

normtrace

protected float normtrace

maxiters

protected int maxiters

offset

protected int offset

dir

protected java.lang.String dir

eps

protected double eps

beta

protected float beta

sigma

protected float sigma

mrfiters

protected int mrfiters

init

protected java.lang.String init

mrfMethod

protected java.lang.String mrfMethod

Constructor Detail

STAPLEgeneral

public STAPLEgeneral()

STAPLEgeneral

public STAPLEgeneral(java.util.ArrayList<double[][]> data)

STAPLEgeneral

public STAPLEgeneral(java.util.ArrayList<double[][]> data,
                     int offset)

Method Detail

setInit

public void setInit(java.lang.String init)

setmaxIters

public void setmaxIters(int max)

setBeta

public void setBeta(float beta)

setSigma

public void setSigma(float sigma)

setEps

public void setEps(double eps)

setSurface

public void setSurface(EmbeddedSurface surf)

setData

public void setData(java.util.ArrayList<double[][]> data)

setDir

public void setDir(java.lang.String dir)

getLabels

public java.util.ArrayList<java.lang.Number> getLabels()

verifySizes

public boolean verifySizes()

findLabels

public void findLabels()

initialize

public void initialize()

Estep

public void Estep()

mrfICM

public void mrfICM(int iters)

Attempt to solve the MRF using Iterated Conditional Modes

Parameters:

iters - Max numer of iterations allowed in the solving the MRF

deepCloneTruth

public java.util.ArrayList<double[][]> deepCloneTruth()

mrfRL

public void mrfRL(int iters)

Attempt to solve the MRF using a Relaxation Labeling technique

Parameters:

iters - Max numer of iterations allowed in the solving the MRF

Mstep

public void Mstep()

getPriorProb

public void getPriorProb()

iterate

public void iterate()

printPerformanceLevels

public void printPerformanceLevels()

getPerformanceLevels

public java.lang.String getPerformanceLevels()

getTruth

public java.util.ArrayList<double[][]> getTruth()

getPeformanceLevel

public PerformanceLevel getPeformanceLevel()

getIndex

public int getIndex(java.util.ArrayList<java.lang.Number> l,
                    java.lang.Number n)

combineRaterLabels

public double[][] combineRaterLabels(double[][] raterin)

combineAllRaterLabs

public void combineAllRaterLabs()

getHardSeg

public double[][] getHardSeg()