edu.jhu.ece.iacl.algorithms.dti.tractography.FACT
Class DTIStudioReader

java.lang.Object
  edu.jhu.ece.iacl.algorithms.dti.tractography.FACT.DTIStudioReader

public class DTIStudioReader
extends java.lang.Object

Created by IntelliJ IDEA. User: bennett Date: Dec 2, 2005 Time: 1:00:14 PM To change this template use Options | File Templates.

Constructor Summary

DTIStudioReader()

Method Summary

double[][][]	computeConnectivityContrast()
double[]	findIntersectPolygon(double[][] pts, double[][] faces, double marker)
double[]	findIntersectPolygonDTIStudioCoordinates(double[][] pts, double[][] faces, double marker)
int[]	getallFiberLengths(java.lang.String filein)
double[][]	getFiber(double index)
double[]	getFiberColor(double index)
Fiber[]	getFibers()
XYZ[]	getFiberXYZchain(int n)
DTIStudioHDR	getHDR()
int	getHDRFiberNR()
static void	main(java.lang.String[] args)
double	read(java.lang.String filename)
double[][][]	readCC(java.lang.String filename)
double[][][][]	readColorVolume(java.lang.String filename)
double[][][][]	readColorVolumeSoft(java.lang.String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DTIStudioReader

public DTIStudioReader()

Method Detail

main

public static void main(java.lang.String[] args)

findIntersectPolygon

public double[] findIntersectPolygon(double[][] pts,
                                     double[][] faces,
                                     double marker)

findIntersectPolygonDTIStudioCoordinates

public double[] findIntersectPolygonDTIStudioCoordinates(double[][] pts,
                                                         double[][] faces,
                                                         double marker)

getFiber

public double[][] getFiber(double index)

getFiberColor

public double[] getFiberColor(double index)

computeConnectivityContrast

public double[][][] computeConnectivityContrast()

getHDR

public DTIStudioHDR getHDR()

getFibers

public Fiber[] getFibers()

getHDRFiberNR

public int getHDRFiberNR()

getFiberXYZchain

public XYZ[] getFiberXYZchain(int n)

read

public double read(java.lang.String filename)
            throws java.io.IOException

Throws:

java.io.IOException

getallFiberLengths

public int[] getallFiberLengths(java.lang.String filein)
                         throws java.io.IOException

Throws:

java.io.IOException

readCC

public double[][][] readCC(java.lang.String filename)
                    throws java.io.IOException

Throws:

java.io.IOException

readColorVolume

public double[][][][] readColorVolume(java.lang.String filename)
                               throws java.io.IOException

Throws:

java.io.IOException

readColorVolumeSoft

public double[][][][] readColorVolumeSoft(java.lang.String filename)
                                   throws java.io.IOException

Throws:

java.io.IOException