edu.jhu.ece.iacl.jist.plugins
Class MedicAlgorithmMipavAdapter

java.lang.Object
  AlgorithmBase
      edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          edu.jhu.ece.iacl.jist.plugins.MedicAlgorithmMipavAdapter

public class MedicAlgorithmMipavAdapter
extends ProcessingAlgorithm

The Class MedicAlgorithmMipavAdapter.

Field Summary

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess

Constructor Summary

MedicAlgorithmMipavAdapter()

Method Summary

protected void	createInputParameters(ParamCollection inputParams) Create input parameters.
protected void	createOutputParameters(ParamCollection outputParams) Create output parameters.
protected void	execute(CalculationMonitor monitor) Execute your algorithm.
void	init(java.io.File pipeFile) Initialize parameters and algorithm.
void	init(PipeAlgorithm pipe) Initialize parameters and algorithm.

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getDefaultJVMArgs, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MedicAlgorithmMipavAdapter

public MedicAlgorithmMipavAdapter()

Method Detail

init

public void init(java.io.File pipeFile)

Initialize parameters and algorithm.

Overrides:

init in class ProcessingAlgorithm

Parameters:

pipeFile - the pipe file

init

public void init(PipeAlgorithm pipe)

Initialize parameters and algorithm.

Overrides:

init in class ProcessingAlgorithm

Parameters:

pipe - the pipe

createInputParameters

protected void createInputParameters(ParamCollection inputParams)

Description copied from class: ProcessingAlgorithm

Create input parameters.

Specified by:

createInputParameters in class ProcessingAlgorithm

Parameters:

inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)

Description copied from class: ProcessingAlgorithm

Create output parameters.

Specified by:

createOutputParameters in class ProcessingAlgorithm

Parameters:

outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)
                throws AlgorithmRuntimeException

Description copied from class: ProcessingAlgorithm

Execute your algorithm.

Specified by:

execute in class ProcessingAlgorithm

Parameters:

monitor - progress monitor

Throws:

AlgorithmRuntimeException - the algorithm runtime exception