edu.jhu.ece.iacl.algorithms.dti.tractography
Class FiberTracker

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.dti.tractography.FiberTracker

public class FiberTracker
extends AbstractCalculation

Nested Class Summary

protected class

FiberTracker.FACTfiber

Field Summary

protected static boolean	BACKWARD
protected int	cnt
protected static float	DTIStudioStepSize
protected float[][][]	faData
protected static boolean	FORWARD
protected int	len
protected static int	MAX_LENGTH
protected int	maxlen
protected double	maxTurnAngle
protected int	minLen
protected float	mnLen
protected int	Nx
protected int	Ny
protected int	Nz
protected static double	pi2
protected double	startFA
protected static float	stepSize
protected double	stopFA
protected float[][][][]	vecData

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

FiberTracker(AbstractCalculation parent, double startFA, double stopFA, double maxTurnAngle, Point3f resolution, ImageData faVol, ImageData vecVol)

FiberTracker(double startFA, double stopFA, double maxTurnAngle, Point3f resolution, ImageData faVol, ImageData vecVol)

Method Summary

protected Fiber	createFiber(FiberTracker.FACTfiber factfbr)
FiberCollection	solve()
FiberCollection	solve(Point3i seed)

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FORWARD

protected static final boolean FORWARD

See Also:

Constant Field Values

BACKWARD

protected static final boolean BACKWARD

See Also:

Constant Field Values

pi2

protected static final double pi2

See Also:

Constant Field Values

stepSize

protected static float stepSize

DTIStudioStepSize

protected static float DTIStudioStepSize

minLen

protected int minLen

maxlen

protected int maxlen

cnt

protected int cnt

len

protected int len

mnLen

protected float mnLen

startFA

protected double startFA

stopFA

protected double stopFA

maxTurnAngle

protected double maxTurnAngle

faData

protected float[][][] faData

vecData

protected float[][][][] vecData

Nx

protected int Nx

Ny

protected int Ny

Nz

protected int Nz

MAX_LENGTH

protected static int MAX_LENGTH

Constructor Detail

FiberTracker

public FiberTracker(AbstractCalculation parent,
                    double startFA,
                    double stopFA,
                    double maxTurnAngle,
                    Point3f resolution,
                    ImageData faVol,
                    ImageData vecVol)

FiberTracker

public FiberTracker(double startFA,
                    double stopFA,
                    double maxTurnAngle,
                    Point3f resolution,
                    ImageData faVol,
                    ImageData vecVol)

Method Detail

solve

public FiberCollection solve()

solve

public FiberCollection solve(Point3i seed)

createFiber

protected Fiber createFiber(FiberTracker.FACTfiber factfbr)