edu.jhu.ece.iacl.plugins.registration
Class MedicAlgorithmEfficientFileCollectionRegistration

java.lang.Object
  extended by AlgorithmBase
      extended by edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          extended by edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration

public class MedicAlgorithmEfficientFileCollectionRegistration
extends ProcessingAlgorithm

Author:
John Bogovic

Nested Class Summary
protected  class MedicAlgorithmEfficientFileCollectionRegistration.FlirtWrapper
           
 
Field Summary
 
Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess
 
Constructor Summary
MedicAlgorithmEfficientFileCollectionRegistration()
           
 
Method Summary
 double[] applyCorrection(double[] grad, double[][] A)
           
protected  void createInputParameters(ParamCollection inputParams)
          Create input parameters.
protected  void createOutputParameters(ParamCollection outputParams)
          Create output parameters.
protected  void execute(CalculationMonitor monitor)
          Execute your algorithm.
static double[][] matrixMultiply(double[][] A, double[][] B)
           
 
Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getDefaultJVMArgs, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, init, init, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MedicAlgorithmEfficientFileCollectionRegistration

public MedicAlgorithmEfficientFileCollectionRegistration()
Method Detail

createInputParameters

protected void createInputParameters(ParamCollection inputParams)
Description copied from class: ProcessingAlgorithm
Create input parameters.

Specified by:
createInputParameters in class ProcessingAlgorithm
Parameters:
inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)
Description copied from class: ProcessingAlgorithm
Create output parameters.

Specified by:
createOutputParameters in class ProcessingAlgorithm
Parameters:
outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)
                throws AlgorithmRuntimeException
Description copied from class: ProcessingAlgorithm
Execute your algorithm.

Specified by:
execute in class ProcessingAlgorithm
Parameters:
monitor - progress monitor
Throws:
AlgorithmRuntimeException - the algorithm runtime exception

applyCorrection

public double[] applyCorrection(double[] grad,
                                double[][] A)

matrixMultiply

public static double[][] matrixMultiply(double[][] A,
                                        double[][] B)