edu.jhu.ece.iacl.algorithms.volume
Class CompareVolumes

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.volume.CompareVolumes

public class CompareVolumes
extends AbstractCalculation

Compare two volumes using a variety of different metrics.

Author:

Blake Lucas

Field Summary

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

CompareVolumes(ImageData v1, ImageData v2, double bg, double binaryThresh, int histBins)

CompareVolumes(ImageData v1, ImageData v2, double backgroundThresh, int histBins)

Method Summary

void	compare()
double	getAbsoluteAverage()
double	getAverage()
double	getCorrelationCoefficient()
double	getDice()
ImageData	getDifferenceVolume()
double	getJaccard()
double	getKurtosisExcess()
ImageData	getMaskVolume()
double	getMax1()
double	getMax2()
double	getMaxError()
double	getMean1()
double	getMean2()
double	getMin1()
double	getMin2()
double	getMinError()
double	getMutualInformation()
double	getPercent1Error()
double	getPercent2Error()
double	getSkewness()
double	getStd1()
double	getStd2()
double	getStdDev()
static java.lang.String	getVersion()
boolean	isComparable()
boolean	isComparable(ImageData v1, ImageData v2)

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompareVolumes

public CompareVolumes(ImageData v1,
                      ImageData v2,
                      double bg,
                      double binaryThresh,
                      int histBins)

CompareVolumes

public CompareVolumes(ImageData v1,
                      ImageData v2,
                      double backgroundThresh,
                      int histBins)

Method Detail

getVersion

public static java.lang.String getVersion()

getMutualInformation

public double getMutualInformation()

getMinError

public double getMinError()

getMaxError

public double getMaxError()

getAverage

public double getAverage()

getStdDev

public double getStdDev()

getSkewness

public double getSkewness()

getCorrelationCoefficient

public double getCorrelationCoefficient()

getJaccard

public double getJaccard()

getDice

public double getDice()

getKurtosisExcess

public double getKurtosisExcess()

getAbsoluteAverage

public double getAbsoluteAverage()

getPercent1Error

public double getPercent1Error()

getPercent2Error

public double getPercent2Error()

compare

public void compare()

getDifferenceVolume

public ImageData getDifferenceVolume()

getMaskVolume

public ImageData getMaskVolume()

isComparable

public boolean isComparable()

isComparable

public boolean isComparable(ImageData v1,
                            ImageData v2)

getMax1

public double getMax1()

Returns:

the max1

getMax2

public double getMax2()

Returns:

the max2

getMin1

public double getMin1()

Returns:

the min1

getMin2

public double getMin2()

Returns:

the min2

getStd1

public double getStd1()

Returns:

the std1

getStd2

public double getStd2()

Returns:

the std2

getMean1

public double getMean1()

Returns:

the mean1

getMean2

public double getMean2()

Returns:

the mean2