edu.jhu.ece.iacl.plugins.labeling
Class MedicAlgorithmMultiAtlasSurfaceLabeling

java.lang.Object
  AlgorithmBase
      edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          edu.jhu.ece.iacl.plugins.labeling.MedicAlgorithmMultiAtlasSurfaceLabeling

public class MedicAlgorithmMultiAtlasSurfaceLabeling
extends ProcessingAlgorithm

Nested Class Summary

protected class

MedicAlgorithmMultiAtlasSurfaceLabeling.Wrapper

Field Summary

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess

Constructor Summary

MedicAlgorithmMultiAtlasSurfaceLabeling()

Method Summary

protected void	createInputParameters(ParamCollection inputParams) Create input parameters.
protected void	createOutputParameters(ParamCollection outputParams) Create output parameters.
protected void	execute(CalculationMonitor monitor) Execute your algorithm.
static void	generateMemoryReport()
java.lang.String[]	getDefaultJVMArgs() Default JVM Arguments --- currently only the Sun VM is supported

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, init, init, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MedicAlgorithmMultiAtlasSurfaceLabeling

public MedicAlgorithmMultiAtlasSurfaceLabeling()

Method Detail

getDefaultJVMArgs

public java.lang.String[] getDefaultJVMArgs()

Description copied from class: ProcessingAlgorithm

Default JVM Arguments --- currently only the Sun VM is supported

Overrides:

getDefaultJVMArgs in class ProcessingAlgorithm

createInputParameters

protected void createInputParameters(ParamCollection inputParams)

Description copied from class: ProcessingAlgorithm

Create input parameters.

Specified by:

createInputParameters in class ProcessingAlgorithm

Parameters:

inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)

Description copied from class: ProcessingAlgorithm

Create output parameters.

Specified by:

createOutputParameters in class ProcessingAlgorithm

Parameters:

outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)

Description copied from class: ProcessingAlgorithm

Execute your algorithm.

Specified by:

execute in class ProcessingAlgorithm

Parameters:

monitor - progress monitor

generateMemoryReport

public static void generateMemoryReport()