edu.jhu.ece.iacl.plugins.utilities.volume
Class MedicAlgorithmMipavReorient

java.lang.Object
  AlgorithmBase
      edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm
          edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmMipavReorient

public class MedicAlgorithmMipavReorient
extends ProcessingAlgorithm

Nested Class Summary

protected class

MedicAlgorithmMipavReorient.reorientWrapper

Field Summary

protected ParamOption	interpolation
protected ParamOption	orientDicom
protected ParamOption	orientX
protected ParamOption	orientY
protected ParamOption	orientZ
protected ParamOption	resolution
protected ParamVolume	result
protected ParamVolume	source
protected ParamVolume	template

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

algorithmInformation, inputParams, JIST_VERSION, outputParams, performance, runningInSeparateProcess

Constructor Summary

MedicAlgorithmMipavReorient()

Method Summary

protected void	createInputParameters(ParamCollection inputParams) Create input parameters.
protected void	createOutputParameters(ParamCollection outputParams) Create output parameters.
protected void	execute(CalculationMonitor monitor) Execute your algorithm.

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm

getAboutFile, getAlgorithmInformation, getAlgorithmLabel, getAlgorithmName, getDefaultJVMArgs, getInput, getMapFile, getOutput, getOutputDirectory, getPreferredSize, getTimeStamp, getUsageFile, init, init, isRunningInSeparateProcess, load, runAlgorithm, runAlgorithm, saveResources, setInput, setMapFile, setOutput, setOutputDirectory, setOutputMetaFile, setPreferredSize, setRunningInSeparateProcess, writeSummaryFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

source

protected ParamVolume source

template

protected ParamVolume template

result

protected ParamVolume result

orientDicom

protected ParamOption orientDicom

orientX

protected ParamOption orientX

orientY

protected ParamOption orientY

orientZ

protected ParamOption orientZ

interpolation

protected ParamOption interpolation

resolution

protected ParamOption resolution

Constructor Detail

MedicAlgorithmMipavReorient

public MedicAlgorithmMipavReorient()

Method Detail

createInputParameters

protected void createInputParameters(ParamCollection inputParams)

Description copied from class: ProcessingAlgorithm

Create input parameters.

Specified by:

createInputParameters in class ProcessingAlgorithm

Parameters:

inputParams - the input parameters

createOutputParameters

protected void createOutputParameters(ParamCollection outputParams)

Description copied from class: ProcessingAlgorithm

Create output parameters.

Specified by:

createOutputParameters in class ProcessingAlgorithm

Parameters:

outputParams - the output parameters

execute

protected void execute(CalculationMonitor monitor)
                throws AlgorithmRuntimeException

Description copied from class: ProcessingAlgorithm

Execute your algorithm.

Specified by:

execute in class ProcessingAlgorithm

Parameters:

monitor - progress monitor

Throws:

AlgorithmRuntimeException - the algorithm runtime exception