edu.jhu.ece.iacl.algorithms.dti.tractography
Class WildBootFiberTracker

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.dti.tractography.WildBootFiberTracker

public class WildBootFiberTracker
extends AbstractCalculation

Nested Class Summary

protected class

WildBootFiberTracker.WildBootFACTfiber

Field Summary

protected static boolean	BACKWARD
protected int	cnt
protected static float	DTIStudioStepSize
protected float[][][]	faData
protected static boolean	FORWARD
protected int	len
protected static int	MAX_LENGTH
protected int	maxlen
protected double	maxTurnAngle
protected int	minLen
protected float	mnLen
protected int	Nx
protected int	Ny
protected int	Nz
protected static double	pi2
protected double	startFA
protected static float	stepSize
protected double	stopFA

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

WildBootFiberTracker(SchemeV1 dtiScheme, DT_Inversion dtiFit, ImageDataFloat DWVolume, float[][][][] outTensors, float[][][][] outExitCode, float[][][][] outIntensity, float[][][] angularUncertaintyMap, byte[][][] mask, double startFA, double stopFA, int seedsPerVoxel, float seedProb, double maxTurnAngle, int usePevCache)

Method Summary

protected Fiber	createFiber(WildBootFiberTracker.WildBootFACTfiber factfbr)
FiberCollection	solve()

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FORWARD

protected static final boolean FORWARD

See Also:

Constant Field Values

BACKWARD

protected static final boolean BACKWARD

See Also:

Constant Field Values

pi2

protected static final double pi2

See Also:

Constant Field Values

stepSize

protected static float stepSize

DTIStudioStepSize

protected static float DTIStudioStepSize

minLen

protected int minLen

maxlen

protected int maxlen

cnt

protected int cnt

len

protected int len

mnLen

protected float mnLen

startFA

protected double startFA

stopFA

protected double stopFA

maxTurnAngle

protected double maxTurnAngle

faData

protected float[][][] faData

Nx

protected int Nx

Ny

protected int Ny

Nz

protected int Nz

MAX_LENGTH

protected static int MAX_LENGTH

Constructor Detail

WildBootFiberTracker

public WildBootFiberTracker(SchemeV1 dtiScheme,
                            DT_Inversion dtiFit,
                            ImageDataFloat DWVolume,
                            float[][][][] outTensors,
                            float[][][][] outExitCode,
                            float[][][][] outIntensity,
                            float[][][] angularUncertaintyMap,
                            byte[][][] mask,
                            double startFA,
                            double stopFA,
                            int seedsPerVoxel,
                            float seedProb,
                            double maxTurnAngle,
                            int usePevCache)

Method Detail

solve

public FiberCollection solve()

createFiber

protected Fiber createFiber(WildBootFiberTracker.WildBootFACTfiber factfbr)