edu.jhu.ece.iacl.algorithms.vabra
Class ImagePair

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.vabra.ImagePair

Direct Known Subclasses:

ImagePairNMI

public abstract class ImagePair
extends AbstractCalculation

Field Summary

protected int[]	boundingBox
protected double	currentDownSampleFactor
protected VectorVolumeVabra	deformedSubject
protected ImageDataFloat	DF
protected VectorVolumeVabra	originalSubject
protected VectorVolumeVabra	subject
protected java.util.List<ImageData>	subjectVols
protected java.util.List<java.lang.Number>	subjectWeights
protected java.lang.String	subjectXMLFile
protected VectorVolumeVabra	target
protected java.util.List<ImageData>	targetVols
protected java.util.List<java.lang.Number>	targetWeights
protected java.lang.String	targetXMLFile
protected double[]	weights

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

ImagePair()

Method Summary

abstract void	coarseGradient(int[] regionCenter, double[] results)
abstract int	coarseGradientParameters()
abstract double	coarseOptimize(int[] regionCenter, double[] results)
void	dispose()
abstract void	fineOptimize(int[][] regionCenters, double[] results)
int[]	getBoundingBox()
VectorVolumeVabra	importVolume(ParamVolume wvols, int InterpType)
VectorVolumeVabra	importVolumes(java.util.List<ImageData> wvols, java.util.List<java.lang.Number> wvals, int[] InterpType)
void	setResolution(float downSampleFactor)
abstract void	setScale(float dx, float dy, float dz)

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

subject

protected VectorVolumeVabra subject

originalSubject

protected VectorVolumeVabra originalSubject

deformedSubject

protected VectorVolumeVabra deformedSubject

target

protected VectorVolumeVabra target

subjectXMLFile

protected java.lang.String subjectXMLFile

targetXMLFile

protected java.lang.String targetXMLFile

currentDownSampleFactor

protected double currentDownSampleFactor

boundingBox

protected int[] boundingBox

DF

protected ImageDataFloat DF

subjectVols

protected java.util.List<ImageData> subjectVols

targetVols

protected java.util.List<ImageData> targetVols

subjectWeights

protected java.util.List<java.lang.Number> subjectWeights

targetWeights

protected java.util.List<java.lang.Number> targetWeights

weights

protected double[] weights

Constructor Detail

ImagePair

public ImagePair()

Method Detail

dispose

public void dispose()

coarseGradient

public abstract void coarseGradient(int[] regionCenter,
                                    double[] results)

coarseGradientParameters

public abstract int coarseGradientParameters()

coarseOptimize

public abstract double coarseOptimize(int[] regionCenter,
                                      double[] results)

fineOptimize

public abstract void fineOptimize(int[][] regionCenters,
                                  double[] results)

setResolution

public void setResolution(float downSampleFactor)

importVolumes

public VectorVolumeVabra importVolumes(java.util.List<ImageData> wvols,
                                       java.util.List<java.lang.Number> wvals,
                                       int[] InterpType)

importVolume

public VectorVolumeVabra importVolume(ParamVolume wvols,
                                      int InterpType)

setScale

public abstract void setScale(float dx,
                              float dy,
                              float dz)

getBoundingBox

public int[] getBoundingBox()