edu.jhu.ece.iacl.algorithms.vabra
Class ImagePairNMI

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.vabra.ImagePair
          edu.jhu.ece.iacl.algorithms.vabra.ImagePairNMI

Direct Known Subclasses:

ImagePairRBF

public abstract class ImagePairNMI
extends ImagePair

Field Summary

Fields inherited from class edu.jhu.ece.iacl.algorithms.vabra.ImagePair

boundingBox, currentDownSampleFactor, deformedSubject, DF, originalSubject, subject, subjectVols, subjectWeights, subjectXMLFile, target, targetVols, targetWeights, targetXMLFile, weights

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

ImagePairNMI(java.util.List<ImageData> subjectVols, java.util.List<java.lang.Number> subjectWeights, java.util.List<ImageData> targetVols, java.util.List<java.lang.Number> targetWeights, AbstractCalculation parent, float robustMaxT, float robustMinT, int numBins, int[] InterpType)

ImagePairNMI(java.util.List<ImageData> subjectVols, java.util.List<java.lang.Number> subjectWeights, java.util.List<ImageData> targetVols, java.util.List<java.lang.Number> targetWeights, AbstractCalculation parent, int[] InterpType)

Method Summary

void	calculateMaxAndMinVals()
void	coarseGradient(int[] regionCenter, double[] results)
int	coarseGradientParameters()
void	dispose()
void	initializeHistograms()
void	normalizeImagesToMax()
void	prepareForNextLevel()
void	prepareForNextLevelParent()
void	setAlltoRobustHist()
void	setResolution(float downSampleFactor)
void	setResolutionParent(float downSampleFactor)
void	threshAtRobustMaxAndMin(VectorVolumeVabra imgVec)
void	updateHistograms()

Methods inherited from class edu.jhu.ece.iacl.algorithms.vabra.ImagePair

coarseOptimize, fineOptimize, getBoundingBox, importVolume, importVolumes, setScale

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImagePairNMI

public ImagePairNMI(java.util.List<ImageData> subjectVols,
                    java.util.List<java.lang.Number> subjectWeights,
                    java.util.List<ImageData> targetVols,
                    java.util.List<java.lang.Number> targetWeights,
                    AbstractCalculation parent,
                    float robustMaxT,
                    float robustMinT,
                    int numBins,
                    int[] InterpType)

ImagePairNMI

public ImagePairNMI(java.util.List<ImageData> subjectVols,
                    java.util.List<java.lang.Number> subjectWeights,
                    java.util.List<ImageData> targetVols,
                    java.util.List<java.lang.Number> targetWeights,
                    AbstractCalculation parent,
                    int[] InterpType)

Method Detail

dispose

public void dispose()

Overrides:

dispose in class ImagePair

threshAtRobustMaxAndMin

public void threshAtRobustMaxAndMin(VectorVolumeVabra imgVec)

setAlltoRobustHist

public void setAlltoRobustHist()

normalizeImagesToMax

public void normalizeImagesToMax()

initializeHistograms

public void initializeHistograms()

setResolution

public void setResolution(float downSampleFactor)

Overrides:

setResolution in class ImagePair

prepareForNextLevelParent

public void prepareForNextLevelParent()

updateHistograms

public void updateHistograms()

prepareForNextLevel

public void prepareForNextLevel()

calculateMaxAndMinVals

public void calculateMaxAndMinVals()

setResolutionParent

public void setResolutionParent(float downSampleFactor)

coarseGradient

public void coarseGradient(int[] regionCenter,
                           double[] results)

Specified by:

coarseGradient in class ImagePair

coarseGradientParameters

public int coarseGradientParameters()

Specified by:

coarseGradientParameters in class ImagePair