edu.jhu.ece.iacl.algorithms.vabra
Class ImagePairRBF

java.lang.Object
  edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation
      edu.jhu.ece.iacl.algorithms.vabra.ImagePair
          edu.jhu.ece.iacl.algorithms.vabra.ImagePairNMI
              edu.jhu.ece.iacl.algorithms.vabra.ImagePairRBF

public class ImagePairRBF
extends ImagePairNMI

Field Summary

Fields inherited from class edu.jhu.ece.iacl.algorithms.vabra.ImagePair

boundingBox, currentDownSampleFactor, deformedSubject, DF, originalSubject, subject, subjectVols, subjectWeights, subjectXMLFile, target, targetVols, targetWeights, targetXMLFile, weights

Fields inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

monitor

Constructor Summary

ImagePairRBF(java.util.List<ImageData> subjectVols, java.util.List<java.lang.Number> subjectWeights, java.util.List<ImageData> targetVols, java.util.List<java.lang.Number> targetWeights, AbstractCalculation parent, float robustMaxT, float robustMinT, int numBins, int[] InterpType)

ImagePairRBF(java.util.List<ImageData> subjectVols, java.util.List<java.lang.Number> subjectWeights, java.util.List<ImageData> targetVols, java.util.List<java.lang.Number> targetWeights, AbstractCalculation parent, int[] InterpType)

Method Summary

float	coarseCostFunction(float[] lambda)
void	coarseGradient(int[] regionCenter, double[] results)
int	coarseGradientParameters()
double	coarseOptimize(int[] regionCenter, double[] gradient)
void	dispose()
void	fineGradient(int[][] regionCenters, int n, double[] results)
void	fineOptimize(int[][] regionCenters, double[] results)
void	setScale(float dx, float dy, float dz)

Methods inherited from class edu.jhu.ece.iacl.algorithms.vabra.ImagePairNMI

calculateMaxAndMinVals, initializeHistograms, normalizeImagesToMax, prepareForNextLevel, prepareForNextLevelParent, setAlltoRobustHist, setResolution, setResolutionParent, threshAtRobustMaxAndMin, updateHistograms

Methods inherited from class edu.jhu.ece.iacl.algorithms.vabra.ImagePair

getBoundingBox, importVolume, importVolumes

Methods inherited from class edu.jhu.ece.iacl.jist.pipeline.AbstractCalculation

add, addTotalUnits, decrementCompletedUnits, decrementCompletedUnits, getCompletedUnits, getCurrentLabel, getCurrentProgress, getLabel, getPerformance, getProgress, getTotalUnits, incrementCompletedUnits, incrementCompletedUnits, isCompleted, markCompleted, reset, setCompletedUnits, setCompletedUnits, setLabel, setMonitor, setTotalUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImagePairRBF

public ImagePairRBF(java.util.List<ImageData> subjectVols,
                    java.util.List<java.lang.Number> subjectWeights,
                    java.util.List<ImageData> targetVols,
                    java.util.List<java.lang.Number> targetWeights,
                    AbstractCalculation parent,
                    int[] InterpType)

ImagePairRBF

public ImagePairRBF(java.util.List<ImageData> subjectVols,
                    java.util.List<java.lang.Number> subjectWeights,
                    java.util.List<ImageData> targetVols,
                    java.util.List<java.lang.Number> targetWeights,
                    AbstractCalculation parent,
                    float robustMaxT,
                    float robustMinT,
                    int numBins,
                    int[] InterpType)

Method Detail

dispose

public void dispose()

Overrides:

dispose in class ImagePairNMI

setScale

public void setScale(float dx,
                     float dy,
                     float dz)

Specified by:

setScale in class ImagePair

coarseGradient

public void coarseGradient(int[] regionCenter,
                           double[] results)

Overrides:

coarseGradient in class ImagePairNMI

coarseGradientParameters

public int coarseGradientParameters()

Overrides:

coarseGradientParameters in class ImagePairNMI

fineGradient

public void fineGradient(int[][] regionCenters,
                         int n,
                         double[] results)

fineOptimize

public void fineOptimize(int[][] regionCenters,
                         double[] results)

Specified by:

fineOptimize in class ImagePair

coarseOptimize

public double coarseOptimize(int[] regionCenter,
                             double[] gradient)

Specified by:

coarseOptimize in class ImagePair

coarseCostFunction

public float coarseCostFunction(float[] lambda)